Problem with dynamic linking

Hello,

I got several questions from a potential contestant for SMT-COMP 2014.

She is having a hard time having her solver executing on the Star-Exec machines seemingly due to absence of dynamic libraries, or incompatibility with existing ones. I also happened to have similar problems in the past while trying to upload third-party solvers to make dry-run competitions on Star-Exec.

This is what she reported:

In a first attempt, libraries were missing:

Code:

0.00/0.01 *solver*: /lib64/libc.so.6: version `GLIBC_2.15' not found
(required by *solver*)
0.00/0.01 *solver*: /lib64/libc.so.6: version `GLIBC_2.14' not found
(required by *solver*)
0.00/0.01 *solver*: /usr/lib64/libstdc++.so.6: version
`GLIBCXX_3.4.15' not found (required by *solver*)
0.00/0.01 *solver*: /usr/lib64/libstdc++.so.6: version
`GLIBCXX_3.4.15' not found (required by
../lib/boost-1_52_0/lib/libboost_thread.so.1.52.0)
0.00/0.01 *solver*: /lib64/libc.so.6: version `GLIBC_2.14' not found
(required by ../lib/solvers/libboolector.so)


Next, *solver* was recompiled to link dynamically against libc and libstdc++, getting her to the next problem:

Code:

0.00/0.01 *solver*: error while loading shared libraries: __vdso_time: invalid mode for dlopen(): Invalid argument


Apparently, the missing library, linux-vdso.so.1, is  kernel-specific, and cannot even be copied.

Her questions are:
- What workaround would you suggest for this problem?
- What operating system does the StarExec cluster run on? What packages are installed there?
- Is it possible to have an account so compile somehow everything from scratch, or is there a foolproof way to make binaries compatible with Star-Exec's machines?

Thanks in advance with your answers.

-- David Deharbe.

Hi, David.

I am sorry for these difficulties. Statically linking the binary is probably the safest move, since then there should not be these dependency problems, right?

We are in the process of implementing a feature where an uploaded solver archive can contain a starexec_build script, which we will execute (sandboxed) as part of the upload. This script can compile the solver on StarExec. I wonder if this would solve your user's problem.

For StarExec machine and OS specs, see https://www.starexec.org/starexec/public/machine-specs.txt.

Finally, here is a dump of all installed packages:

check-mk-agent-1.2.4p2-1.el6.x86_64
tftp-server-0.49-7.el6.x86_64
libgnomeui-2.24.1-4.el6.x86_64
perl-Net-IP-1.25-13.el6.noarch
pilot-link-0.12.4-6.el6.x86_64
setuptool-1.19.9-3.el6.x86_64
gnome-python2-bonobo-2.28.0-3.el6.x86_64
ruby-rgen-0.6.5-1.el6.noarch
python-iniparse-0.3.1-2.1.el6.noarch
iwl6000-firmware-9.221.4.1-1.el6.noarch
boost-graph-1.41.0-15.el6_4.x86_64
zip-3.0-1.el6.x86_64
rhn-setup-gnome-1.0.0-87.el6.noarch
libgcrypt-1.4.5-11.el6_4.x86_64
pygtk2-libglade-2.16.0-3.el6.x86_64
pkgconfig-0.23-9.1.el6.x86_64
boost-devel-1.41.0-15.el6_4.x86_64
sysvinit-tools-2.87-4.dsf.el6.x86_64
gnome-doc-utils-0.18.1-1.el6.noarch
popt-1.13-7.el6.x86_64
gnome-icon-theme-2.28.0-2.el6.noarch
cairo-1.8.8-3.1.el6.i686
krb5-devel-1.10.3-10.el6_4.6.x86_64
yum-metadata-parser-1.1.2-16.el6.x86_64
audit-libs-2.2-2.el6.x86_64
rpm-build-4.8.0-27.el6.x86_64
csgmon-2.5-0.csg.noarch
atk-1.30.0-1.el6.x86_64
ORBit2-2.14.17-3.2.el6_3.i686
elfutils-libelf-0.152-1.el6.x86_64
subscription-manager-gui-1.1.23.1-1.el6_4.x86_64
libwmf-0.2.8.4-22.el6.x86_64
python-libs-2.6.6-51.el6.x86_64
python-urlgrabber-3.9.1-8.el6.noarch
shadow-utils-4.1.4.2-13.el6.x86_64
ntsysv-1.3.49.3-2.el6.x86_64
suitesparse-3.4.0-7.el6.x86_64
plymouth-plugin-label-0.8.3-24.el6.x86_64
compat-db-4.6.21-15.el6.i686
gupnp-0.13.2-1.el6.x86_64
cyrus-sasl-md5-2.1.23-13.el6_3.1.x86_64
avahi-libs-0.6.25-11.el6.x86_64
compat-db-4.6.21-15.el6.x86_64
bzip2-devel-1.0.5-7.el6_0.i686
gtk2-devel-2.20.1-4.el6.x86_64
rhnlib-2.5.22-12.el6.noarch
libgpg-error-1.7-4.el6.x86_64
gnuplot-4.2.6-2.el6.x86_64
libbonoboui-2.24.2-3.el6.i686
libibverbs-1.1.7-1.el6.x86_64
m17n-db-datafiles-1.5.5-1.1.el6.noarch
device-mapper-event-1.02.74-10.el6_3.3.x86_64
lcms-libs-1.19-1.el6.x86_64
gpm-1.20.6-12.el6.x86_64
docbook-style-dsssl-1.79-10.el6.noarch
gmp-4.3.1-7.el6_2.2.i686
glibc-headers-2.12-1.132.el6.x86_64
farsight2-0.0.16-1.1.el6.x86_64
libXmu-1.0.5-1.el6.x86_64
xterm-253-1.el6.x86_64
libxcb-devel-1.8.1-1.el6.x86_64
librdmacm-1.0.17-1.el6.x86_64
pygobject2-doc-2.20.0-5.el6.x86_64
biosdevname-0.3.11-1.el6_3.1.x86_64
pam_passwdqc-1.0.5-6.el6.x86_64
jline-0.9.94-0.8.el6.noarch
ekiga-3.2.6-4.el6.x86_64
texlive-utils-2007-57.el6_2.x86_64
libcap-ng-0.6.4-3.el6_0.1.x86_64
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pdsh-mod-dshgroup-2.28-1.el6.x86_64
infinipath-psm-3.0.1-115.1015_open.2.el6.x86_64
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tmpwatch-2.9.16-4.el6.x86_64
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libreport-plugin-kerneloops-2.0.9-5.el6_3.2.x86_64
audit-libs-devel-2.2-2.el6.x86_64
rhnsd-4.9.3-2.el6.x86_64
abrt-cli-2.0.8-6.el6_3.2.x86_64
scl-utils-20120423-2.el6.x86_64
perl-IO-Socket-SSL-1.31-2.el6.noarch
elinks-0.12-0.21.pre5.el6_3.x86_64
file-devel-5.04-13.el6.x86_64
pulseaudio-libs-glib2-0.9.21-14.el6_3.x86_64
jdk-1.6.0_41-fcs.x86_64
libnl-1.1-14.el6.x86_64
ledmon-0.32-1.el6.x86_64
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cryptsetup-luks-1.2.0-7.el6.x86_64
xorg-x11-server-utils-7.5-13.el6.x86_64
libart_lgpl-devel-2.3.20-5.1.el6.x86_64
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inotify-tools-3.14-1.el6.x86_64
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portreserve-0.0.4-9.el6.x86_64
jasper-libs-1.900.1-15.el6_1.1.i686
libselinux-ruby-2.0.94-5.3.el6_4.1.x86_64
compat-db42-4.2.52-15.el6.x86_64
telnet-0.17-47.el6_3.1.x86_64
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xkeyboard-config-2.3-1.el6.noarch
elfutils-libelf-0.152-1.el6.i686
perl-Pod-Escapes-1.04-131.el6_4.x86_64
gnome-doc-utils-stylesheets-0.18.1-1.el6.noarch
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zlib-1.2.3-29.el6.i686
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jpackage-utils-1.7.5-3.12.el6.noarch

Static binaries are the way to go. Is there some reason she can't build a static binary?

Hi,

Sorry for the late answer, but as I did not get emails notifying me updates on this topic, I missed your reply.

The reason static linking is complicated is the following:

"The static linking (with passing -static-libgcc
-static-libstdc++ -static flags to the linker) has not worked so far as
our solver is based on the symbolic execution engine KLEE, which in turn
is based on LLVM, where some dynamic linking is taking place."

I do not know if she managed to overcome these technical hurdles, though.

Best regards,

-- David.

Hey,

I just ran into the same problem.
Is there any update on "starexec_build"?

Cheers,
daniel

We expect to deploy starexec_build today, but as part of a compromise with our IT team, we have to limit this to community leaders. So people who have solvers that need to compile on StarExec to run are going to need to work with their community leaders to get those uploaded. I will post more about this on the blog

http://starexec.wordpress.com

when we have the release out.

Aaron